Missing links (FirstGlance in Jmol)

M
m0lviz@yahoo.com
Wed, Aug 28, 2024 7:11 PM

All the links got stripped out in my previous message. I'll try again:
FirstGlance in Jmol http://firstglance.jmol.org
Unique capabilities and conveniences  http://firstglance.jmol.org/whatis.htm#unique
Design goals   https://www.youtube.com/watch?v=80og2ASrvnQ&t=76s 
ConSurf Server results in FirstGlance  http://firstglance.jmol.org/notes.htm#consurf
Spreadsheet-ready lists:

  • Atoms contacting any moiety you specify with bond types, distances, and conservation levels  http://firstglance.jmol.org/contacts-1igt-250-474-chain-D.html
  • All salt bridges  http://firstglance.jmol.org/imgs/1zms-sb-bu2-consurf-apd1.06.html
    Illustrations of electrostatic potential maps available through FirstGlance (by iCn3D)  https://proteopedia.org/wiki/index.php/Electrostatic_potential_maps
    Rocking animations made with a few mouse clicks:  https://tinyurl.com/movingmolecules
    Instructions for capturing more complex movies, with examples:  http://firstglance.jmol.org/videocapture.htm
    ALL IMPROVEMENTS in the new FirstGlance in Jmol:  http://firstglance.jmol.org/versions.htm
    Virus capsids, clathrin cages, bacterial gas vesicles viewed in FirstGlance: https://proteopedia.org/w/FirstGlance/Virus_Capsids_and_Other_Large_Assemblies
    Demo of visualizing and vetting protein crosslinks (e.g. isopeptide bonds) in FirstGlance using electron density maps:  https://www.youtube.com/watch?v=fjir4cqsI3U
    -Eric
All the links got stripped out in my previous message. I'll try again: FirstGlance in Jmol http://firstglance.jmol.org Unique capabilities and conveniences  http://firstglance.jmol.org/whatis.htm#unique Design goals   https://www.youtube.com/watch?v=80og2ASrvnQ&t=76s  ConSurf Server results in FirstGlance  http://firstglance.jmol.org/notes.htm#consurf Spreadsheet-ready lists: - Atoms contacting any moiety you specify with bond types, distances, and conservation levels  http://firstglance.jmol.org/contacts-1igt-250-474-chain-D.html - All salt bridges  http://firstglance.jmol.org/imgs/1zms-sb-bu2-consurf-apd1.06.html Illustrations of electrostatic potential maps available through FirstGlance (by iCn3D)  https://proteopedia.org/wiki/index.php/Electrostatic_potential_maps Rocking animations made with a few mouse clicks:  https://tinyurl.com/movingmolecules Instructions for capturing more complex movies, with examples:  http://firstglance.jmol.org/videocapture.htm ALL IMPROVEMENTS in the new FirstGlance in Jmol:  http://firstglance.jmol.org/versions.htm Virus capsids, clathrin cages, bacterial gas vesicles viewed in FirstGlance: https://proteopedia.org/w/FirstGlance/Virus_Capsids_and_Other_Large_Assemblies Demo of visualizing and vetting protein crosslinks (e.g. isopeptide bonds) in FirstGlance using electron density maps:  https://www.youtube.com/watch?v=fjir4cqsI3U -Eric