Time-stamped Copies of PDB and EMDB Archives

JY
Jasmine Young
Thu, Jan 4, 2024 2:21 PM

Dear PDB-l,

A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org,
https://s3.rcsb.org) as of January 2, 2024 has been added to
ftp://snapshots.wwpdb.org, https://s3snapshots.rcsb.org (AWS), and
ftp://snapshots.pdbj.org. Snapshots have been archived annually since
2005 to provide readily identifiable data sets for research on the PDB
archive.

The directory 20240101 includes the 214,121 experimentally-determined
structure and experimental data available at that time. Atomic
coordinate and related metadata are available in PDBx/mmCIF, PDB, and
XML file formats. The date and time stamp of each file indicates the
last time the file was modified. The snapshot of PDB Core Archive is
1,242 GB.

A snapshot of the EMDB Core archive
(ftp://ftp.ebi.ac.uk/pub/databases/emdb/) as of January 01, 2024 can be
found in ftp://ftp.ebi.ac.uk/pub/databases/emdb_vault/20240101/ and
ftp://snapshots.pdbj.org/20240101/. The snapshot of EMDB Core Archive
contains map files and their metadata within XML files for both released
and obsoleted entries (32,033 and 282, respectively) and is 14 TB in size.

--
Regards,

Jasmine

---==========================
Jasmine Young, Ph.D.
Biocuration Team Lead
RCSB Protein Data Bank
Research Professor
Institute for Quantitative Biomedicine
Rutgers, The State University of New Jersey
174 Frelinghuysen Rd
Piscataway, NJ 08854-8087

Email: jasmine@rcsb.rutgers.edu
Phone: (848)445-0103 ext 4920
Fax: (732)445-4320

---==========================

Dear PDB-l, A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org, https://s3.rcsb.org) as of January 2, 2024 has been added to ftp://snapshots.wwpdb.org, https://s3snapshots.rcsb.org (AWS), and ftp://snapshots.pdbj.org. Snapshots have been archived annually since 2005 to provide readily identifiable data sets for research on the PDB archive. The directory 20240101 includes the 214,121 experimentally-determined structure and experimental data available at that time. Atomic coordinate and related metadata are available in PDBx/mmCIF, PDB, and XML file formats. The date and time stamp of each file indicates the last time the file was modified. The snapshot of PDB Core Archive is 1,242 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub/databases/emdb/) as of January 01, 2024 can be found in ftp://ftp.ebi.ac.uk/pub/databases/emdb_vault/20240101/ and ftp://snapshots.pdbj.org/20240101/. The snapshot of EMDB Core Archive contains map files and their metadata within XML files for both released and obsoleted entries (32,033 and 282, respectively) and is 14 TB in size. -- Regards, Jasmine =========================================================== Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email: jasmine@rcsb.rutgers.edu Phone: (848)445-0103 ext 4920 Fax: (732)445-4320 ===========================================================