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Please help us improve our PDBe-KB aggregated views of proteins

David Armstrong

Mon, Dec 7, 2020 4:54 PM

Dear pdb-l,

To help us improve our PDBe-KB aggregated views of proteins, please fill
in the following survey: https://urldefense.com/v3/https://tinyurl.com/y4vw8qkv;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXg_rb7Xio$
<https://urldefense.com/v3/https://tinyurl.com/y4vw8qkv;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXg_rb7Xio$ >

The Protein Data Bank in Europe - Knowledge Base (PDBe-KB,
https://urldefense.com/v3/https://pdbe-kb.org;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgjHM1ShY$ <https://urldefense.com/v3/https://pdbe-kb.org;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgjHM1ShY$ >) has recently released the
latest update to its aggregated view of proteins
(https://urldefense.com/v3/https://www.ebi.ac.uk/pdbe/about/news/superimposition-and-batch-downloads-added-pdbe-kb-aggregated-views;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgzmD2SZg$
<https://urldefense.com/v3/https://www.ebi.ac.uk/pdbe/about/news/superimposition-and-batch-downloads-added-pdbe-kb-aggregated-views;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgzmD2SZg$ >).
These pages provide a comprehensive overview of structural data
available in the PDB for a full-length protein sequence, with all the
observed small-molecules interacting with the protein, all the
macromolecular interaction sites and partners, and additional functional
annotations, such as sequence conservation and effects of mutations.

We are interested in your feedback and suggestions for further improving
these aggregated views of proteins (https://urldefense.com/v3/https://pdbe-kb.org/proteins;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXglkhFr9k$
<https://urldefense.com/v3/https://pdbe-kb.org/proteins;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXglkhFr9k$ >) and for addressing potential gaps in
their functionality or the data they offer.

If you have any questions, please feel free to contact us directly.

Kind regards,

David Armstrong

--
David Armstrong
Outreach and Training Coordinator
PDBe
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD UK
Tel: +44 1223 492544

** *Dear pdb-l,* * To help us improve our PDBe-KB aggregated views of proteins, please fill in the following survey: https://urldefense.com/v3/__https://tinyurl.com/y4vw8qkv__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXg_rb7Xio$ <https://urldefense.com/v3/__https://tinyurl.com/y4vw8qkv__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXg_rb7Xio$ > The Protein Data Bank in Europe - Knowledge Base (PDBe-KB, https://urldefense.com/v3/__https://pdbe-kb.org__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgjHM1ShY$ <https://urldefense.com/v3/__https://pdbe-kb.org__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgjHM1ShY$ >) has recently released the latest update to its aggregated view of proteins (https://urldefense.com/v3/__https://www.ebi.ac.uk/pdbe/about/news/superimposition-and-batch-downloads-added-pdbe-kb-aggregated-views__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgzmD2SZg$ <https://urldefense.com/v3/__https://www.ebi.ac.uk/pdbe/about/news/superimposition-and-batch-downloads-added-pdbe-kb-aggregated-views__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXgzmD2SZg$ >). These pages provide a comprehensive overview of structural data available in the PDB for a full-length protein sequence, with all the observed small-molecules interacting with the protein, all the macromolecular interaction sites and partners, and additional functional annotations, such as sequence conservation and effects of mutations. We are interested in your feedback and suggestions for further improving these aggregated views of proteins (https://urldefense.com/v3/__https://pdbe-kb.org/proteins__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXglkhFr9k$ <https://urldefense.com/v3/__https://pdbe-kb.org/proteins__;!!Mih3wA!QSQTcLwJcWRbe3w7sgTLs-RSqFAsqqRwbb15iHkrJd-9hcHr-qzFztXglkhFr9k$ >) and for addressing potential gaps in their functionality or the data they offer. If you have any questions, please feel free to contact us directly. Kind regards, David Armstrong * -- David Armstrong Outreach and Training Coordinator PDBe European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD UK Tel: +44 1223 492544